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Crystal structure of human Sirt5 in complex with Fluor-de-Lys peptide and resveratrol
4HDA
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/hydrolase Activator
    Structure Weight: 60955.53
    Molecule: NAD-dependent protein deacylase sirtuin-5, mitochondrial
    Polymer: 1 Type: protein Length: 275
    Chains: A, B
    EC#: 3.5.1   
    Fragment: UNP residues 34-302
    Organism: Homo sapiens
    Gene Names: Gene View for SIRT5 SIR2L5
    UniProtKB: Protein Feature View | Search PDB | Q9NXA8  
    Molecule: Fluor-de-Lys peptide
    Polymer: 2 Type: protein Length: 4
    Chains: F
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4HD8   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    STL
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    STL C14 H12 O3
    RESVERATROL
    STL:4HDA
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    FDL
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    FDL C18 H23 N3 O4 LYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Gertz, M.,  Steegborn, C.

    Deposition:   2012-10-02
    Release:   2012-12-05
    Last Modified (REVDAT):   2013-02-20
     
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    2013-02-20
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.60
    R-Value: 0.205 (obs.)
    R-Free: 0.252
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 41.30 α = 90.00 
    b = 112.69 β = 90.05 
    c = 55.89 γ = 90.00