4H98

Candida glabrata dihydrofolate reductase complexed with NADPH and 5-{3-[3-(2,3-dihydro-1,4-benzodioxin-6-yl)-5-methoxyphenyl]prop-1-yn-1-yl}-6-ethylpyrimidine-2,4-diamine (UCP1018)

Structural Biology Knowledgebase: 4H98 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 4H98

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 54455.93

Macromolecule Entities
Molecule Chains Length Organism Details
Dihydrofolate Reductase A, B 224 [candida] glabrata EC#: 1.5.1.3 IUBMB
Gene Name(s): CAGL0J03894g
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
14Q
Query on 14Q

A, B 5-{3-[3-(1,3-benzodioxol-5-yl)-5-methoxyphenyl]prop- 1-yn-1-yl}-6-ethylpyrimidine-2,4-diamine
C23 H22 N4 O3
DEWBMLVREOXAJX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.223
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.71 α = 90.00
b = 42.71 β = 90.00
c = 230.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-24
  • Released Date: 2013-03-27
  • Deposition author(s): Paulsen, J.L., Anderson, A.C.

Revision History

  • 2013-11-20
    Type: Non-polymer description | Details: change NAP to NDP