4H5X

human Plk1-PBD with a glycerol bound at the phophopeptide binding site

Structural Biology Knowledgebase: 4H5X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4H5X

Classification: TRANSFERASE

Total Structure Weight: 55181.18

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase PLK1 A, B 240 Homo sapiens EC#: 2.7.11.21 IUBMB
Fragment: UNP residues 367-603
Gene Name(s): PLK1 Gene View PLK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.198
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 33.30 α = 90.00
b = 102.54 β = 94.11
c = 67.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-19
  • Released Date: 2012-10-03
  • Deposition author(s): Yin, Z., Rehse, P.H.
  • Previous versions: 3MHQ

Revision History

  • 2013-03-06
    Type: Citation | Details: Citation update