4H5A

DNA octamer D (GTseGTACAC) partially crosslinked with platinum

Structural Biology Knowledgebase: 4H5A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4H5A

Classification: DNA

Total Structure Weight: 2715.70

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3') A 8 synthetic short DNA 8mer with Se modification

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PT
Query on PT

A PLATINUM (II) ION
Pt
HRGDZIGMBDGFTC-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
2ST
Query on 2ST
A DNA LINKING C11 H17 N2 O8 P Se DT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.212
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.31 α = 90.00
b = 42.31 β = 90.00
c = 24.31 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-09-18
  • Released Date: 2012-10-03
  • Deposition author(s): Zhang, W., Coronado, G., Huang, Z.

Revision History

No revisions since initial release