R283K DNA polymerase beta ternary complex with a templating 8OG and incoming dCTP analog DOI:10.2210/pdb4gxj/pdb   NDB ID: NA2020

4GXJ   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase/dna Structure Weight: 48626.99 Molecule: DNA polymerase beta Polymer: 1 Type: protein Length: 335 Chains: A EC#: 2.7.7.7    4.2.99    Mutation: R283K Organism Homo sapiens Gene Name POLB UniProtKB:   Protein Feature View | Search PDB | P06746     Molecule: DNA (5'-D(P*GP*TP*CP*GP*G)-3') Polymer: 2 Type: dna Length: 5 Chains: D Organism synthetic construct Molecule: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3') Polymer: 3 Type: dna Length: 10 Chains: P Organism synthetic construct Molecule: DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') Polymer: 4 Type: dna Length: 16 Chains: T Organism synthetic construct     Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy     Polymer: 4 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy         Related PDB Entries Hide Identifier Details 4GXI    4GXK        Ligand Chemical Component Hide Identifier Formula Name Interactions 6CF Search  Download  C10 H16 F2 N3 O12 P3 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine   Ligand Explorer MN Search  Download  Mn MANGANESE (II) ION   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type 8OG Search  C10 H14 N5 O8 P DG dnaLinking     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam   GO Terms: 26 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA2020     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Freudenthal, B.D.,  Beard, W.A.,  Wilson, S.H. Deposition:   2012-09-04 Release:   2013-01-16 Last Modified (REVDAT):   2013-02-27     Revision History    Hide Mouse over text for details 2013-02-27 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   2.20 R-Value: 0.237 (obs.) R-Free: 0.292 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 55.08 α = 90.00  b = 77.43 β = 114.45  c = 55.13 γ = 90.00      Molecule of the Month Hide DNA Polymerase