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Crystal Structure of NSD3 tandem PHD5-C5HCH domains complexed with H3K9me3 peptide
4GNG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/nuclear Protein
    Structure Weight: 28132.70
    Molecule: Histone-lysine N-methyltransferase NSD3
    Polymer: 1 Type: protein Length: 107
    Chains: A, D
    EC#: 2.1.1.43   
    Fragment: UNP RESIDUES 1310-1413
    Organism Homo sapiens
    Gene Names WHSC1L1 NSD3 DC28
    UniProtKB:   Protein Feature View | Search PDB | Q9BZ95  
    Molecule: Histone H3.3
    Polymer: 2 Type: protein Length: 15
    Chains: B, F
    Fragment: UNP RESIDUES 2-16
    Organism Homo sapiens
    Gene Names H3F3A H3.3A H3F3 PP781 H3F3B H3.3B
    UniProtKB:   Protein Feature View | Search PDB | P84243  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4GND   
    4GNE   
    4GNF   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    M3L
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    M3L C9 H21 N2 O2 LYS lPeptideLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Li, F.,  He, C.,  Wu, J.,  Shi, Y.

    Deposition:   2012-08-17
    Release:   2013-01-02
    Last Modified (REVDAT):   2013-09-04
     
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    2013-09-04
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.73
    R-Value: 0.183 (obs.)
    R-Free: 0.214
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 56.20 α = 90.00 
    b = 59.96 β = 90.00 
    c = 95.23 γ = 90.00