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DNA dodecamer containing 5-hydroxymethyl-cytosine
DOI:10.2210/pdb4glc/pdb   NDB ID: NA1984
4GLC
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7386.90
    Molecule: DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
    Polymer: 1 Type: dna Length: 12
    Chains: A, B
    Organism synthetic construct
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5HC
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    5HC C10 H16 N3 O8 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1984
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Spingler, B.,  Renciuk, D.,  Vorlickova, M.

    Deposition:   2012-08-14
    Release:   2013-08-28
    Last Modified (REVDAT):   2013-12-04
     
  •   Revision History    Hide
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    2013-12-04
    Citation
    2013-09-04
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.83
    R-Value: 0.233 (obs.)
    R-Free: 0.306
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 24.51 α = 90.00 
    b = 41.60 β = 90.00 
    c = 66.04 γ = 90.00