4GL4

Crystal structure of oxidized S-nitrosoglutathione reductase from Arabidopsis thalina, complex with NADH

Structural Biology Knowledgebase: 4GL4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GL4

Classification: oxidoreductase

Total Structure Weight: 83976.74

Macromolecule Entities
Molecule Chains Length Organism Details
Alcohol dehydrogenase class-3 A, B 378 Arabidopsis thaliana EC#: 1.1.1.1 IUBMB
Gene Name(s): ADH2 ADHIII FDH1 At5g43940 MRH10.4

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.196
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 91.63 α = 90.00
b = 91.63 β = 90.00
c = 173.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-13
  • Released Date: 2013-02-27
  • Deposition author(s): Weichsel, A., Crotty, J., Montfort, W.R.

Revision History

  • 2013-11-06
    Type: Non-polymer description | Details: --