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Crystal structure of the TAL effector dHax3 bound to specific DNA-RNA hybrid
DOI:10.2210/pdb4gg4/pdb   NDB ID: NA1983
4GG4
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna/rna
    Structure Weight: 62452.05
    Molecule: Hax3
    Polymer: 1 Type: protein Length: 499
    Chains: A
    Fragment: TAL effector, UNP residues 231-720
    Mutation: multiple mutations
    Organism: Xanthomonas campestris pv. armoraciae
    Gene Name: hax3
    UniProtKB: Protein Feature View | Search PDB | Q3ZD72  
    Molecule: DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3')
    Polymer: 2 Type: dna Length: 17
    Chains: G
    Details: sense DNA strand
    Molecule: RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*UP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3')
    Polymer: 3 Type: rna Length: 17
    Chains: H
    Details: anti-sense RNA strand
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Xanthomonas campestris pv. armoraciae   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3V6P   
    3V6T   
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1983
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Yin, P.,  Deng, D.,  Yan, C.Y.,  Pan, X.J.,  Yan, N.,  Shi, Y.G.

    Deposition:   2012-08-05
    Release:   2012-10-03
    Last Modified (REVDAT):   2013-07-17
     
  •   Revision History    Hide
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    2013-07-17
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.195 (obs.)
    R-Free: 0.243
    Space Group: P 61
    Unit Cell:
      Length [Å] Angles [°]
    a = 99.74 α = 90.00 
    b = 99.74 β = 90.00 
    c = 134.49 γ = 120.00