4GG4

Crystal structure of the TAL effector dHax3 bound to specific DNA-RNA hybrid

Structural Biology Knowledgebase: 4GG4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GG4

Classification: DNA BINDING PROTEIN / DNA / RNA

Total Structure Weight: 62452.03


Macromolecule Entities
Molecule Chains Length Organism Details
Hax3 A 499 Xanthomonas campestris Fragment: TAL effector, UNP residues 231-720
Mutation: N300H, I301D, N368H, I369D, H402N, D403G, H436N, D437G, H470N, D471G, S505I, S539G, N572H, S573D, H606N, D607G, N640H, I641D
Gene Name(s): hax3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3') G 17 synthetic sense DNA strand
RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*UP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3') H 17 synthetic anti-sense RNA strand


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.193
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 99.74 α = 90.00
b = 99.74 β = 90.00
c = 134.49 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-05
  • Released Date: 2012-10-03
  • Deposition author(s): Yin, P., Deng, D., Yan, C.Y., Pan, X.J., Yan, N., Shi, Y.G.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update