4GFN

Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic

Structural Biology Knowledgebase: 4GFN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GFN

Classification: Isomerase / Isomerase inhibitor

Total Structure Weight: 24315.78

Macromolecule Entities
Molecule Chains Length Organism Details
DNA gyrase subunit B A 215 Enterococcus faecalis EC#: 5.99.1.3 IUBMB
Fragment: unp residues 18-224

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SUY
Query on SUY

A (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin- 5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin- 4-yl]-3-azabicyclo[3.1.0]hexan-6-amine
C17 H18 Cl N7 S
OOKWYXHTSPTWDS-MSRIBSCDSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SUY N/A in BindingDB
Ki: 5 nM  BindingMOAD
Ki: 5 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.162
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.78 α = 90.00
b = 58.21 β = 90.00
c = 66.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-03
  • Released Date: 2013-02-13
  • Deposition author(s): Bensen, D.C., Trzoss, M., Tari, L.W.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update