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Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1
4GDK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Protein Binding
    Structure Weight: 94904.14
    Molecule: Ubiquitin-like protein ATG12
    Polymer: 1 Type: protein Length: 91
    Chains: A, D
    Organism: Homo sapiens
    Gene Names: Gene View for ATG12 APG12 APG12L
    UniProtKB: Protein Feature View | Search PDB | O94817  
    Molecule: Autophagy protein 5
    Polymer: 2 Type: protein Length: 275
    Chains: B, E
    Organism: Homo sapiens
    Gene Names: Gene View for ATG5 APG5L ASP
    UniProtKB: Protein Feature View | Search PDB | Q9H1Y0  
    Molecule: Autophagy-related protein 16-1
    Polymer: 3 Type: protein Length: 36
    Chains: C, F
    Organism: Homo sapiens
    Gene Names: Gene View for ATG16L1 APG16L UNQ9393/PRO34307
    UniProtKB: Protein Feature View | Search PDB | Q676U5  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4GDL  The structure of the same complex in a different space group. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NA
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    NA Na
    SODIUM ION
     
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Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Otomo, C.,  Metlagel, Z.,  Takaesu, G.,  Otomo, T.

    Deposition:   2012-07-31
    Release:   2012-12-05
    Last Modified (REVDAT):   2013-01-16
     
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    2013-01-16
    Citation
    2013-01-02
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.70
    R-Value: 0.180 (obs.)
    R-Free: 0.236
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 43.76 α = 90.00 
    b = 113.15 β = 90.00 
    c = 210.68 γ = 90.00