4G9C

Human B-Raf Kinase Domain bound to a Type II Pyrazolopyridine Inhibitor

Structural Biology Knowledgebase: 4G9C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.260

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G9C

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 71416.73

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase B-raf A, B 307 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Kinase Domain (UNP residues 432-726)
Gene Name(s): BRAF Gene View BRAF1 RAFB1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0WP
Query on 0WP

A, B 3-{[3-(2-cyanopropan-2-yl)benzoyl]amino}- 2,6-difluoro-N-(3-methoxy-2H-pyrazolo[3,4- b]pyridin-5-yl)benzamide
C25 H20 F2 N6 O3
BCTNUFBSYWOHHJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0WP N/A in BindingDB
N/A in BindingMoad
IC50: 2.3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.260
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.05 α = 90.00
b = 107.05 β = 90.00
c = 161.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-23
  • Released Date: 2012-11-14
  • Deposition author(s): Voegtli, W.C., Sturgis, H.L.

Revision History

No revisions since initial release