4G8L

Active state of intact sensor domain of human RNase L with 2-5A bound

Structural Biology Knowledgebase: 4G8L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.228

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G8L

Classification: HYDROLASE

Total Structure Weight: 152601.11

Macromolecule Entities
Molecule Chains Length Organism Details
2-5A-dependent ribonuclease A, B, C, D 337 Homo sapiens EC#: 3.1.26 IUBMB
Fragment: 2-5A-sensor domain (ANK domain)
Gene Name(s): RNASEL Gene View RNS4

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
25A
Query on 25A

A, B, C, D 5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'- >5')ADENOSINE
C30 H38 N15 O19 P3
SIIZPVYVXNXXQG-UQTMIEBXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
25A EC50: 0.21 nM (100) BindingDB
IC50: 1.1 - 20 nM (100) BindingDB

N/A in BindingMoad
Kd: 10 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.228
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.98 α = 90.00
b = 164.11 β = 100.20
c = 86.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-23
  • Released Date: 2012-10-31
  • Deposition author(s): Han, Y., Whitney, G., Donovan, J., Korennykh, A.

Revision History

  • 2012-11-14
    Type: Citation | Details: Citation update