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Complex structure of LSD2/AOF1/KDM1b with H3K4 mimic
4FWF
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase/protein Binding
    Structure Weight: 92516.00
    Molecule: Lysine-specific histone demethylase 1B
    Polymer: 1 Type: protein Length: 796
    Chains: A
    EC#: 1   
    Fragment: UNP residues 30-822
    Organism Homo sapiens
    Gene Names KDM1B AOF1 C6orf193 LSD2
    UniProtKB:   Protein Feature View | Search PDB | Q8NB78  
    Molecule: Histone H3.1
    Polymer: 2 Type: protein Length: 20
    Chains: E
    Fragment: UNP residues 2-21
    Mutation: K4M
    Organism Homo sapiens
    Gene Names HIST1H3A H3FA HIST1H3B H3FL HIST1H3C H3FC HIST1H3D H3FB HIST1H3E H3FD HIST1H3F H3FI HIST1H3G H3FH HIST1H3H H3FK HIST1H3I H3FF HIST1H3J H3FJ
    UniProtKB:   Protein Feature View | Search PDB | P68431  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4FWE   
    4FWJ   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FAD
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    FAD C27 H33 N9 O15 P2
    FLAVIN-ADENINE DINUCLEOTIDE
    FAD:4FWF
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Zhang, Q.,  Chen, Z.

    Deposition:   2012-07-01
    Release:   2013-01-16
    Last Modified (REVDAT):   2013-07-03
     
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    2013-07-03
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.70
    R-Value: 0.207 (obs.)
    R-Free: 0.237
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 110.44 α = 90.00 
    b = 98.54 β = 96.08 
    c = 101.36 γ = 90.00