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Human TDG in a post-reactive complex with 5-hydroxymethyluracil (5hmU)
DOI:10.2210/pdb4fnc/pdb   NDB ID: NA1875
4FNC
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 40637.24
    Molecule: G/T mismatch-specific thymine DNA glycosylase
    Polymer: 1 Type: protein Length: 204
    Chains: A
    EC#: 3.2.2.29   
    Fragment: human TDG glycosylase domain, UNP residues 111-308
    Organism Homo sapiens
    Gene Name TDG
    UniProtKB:   Protein Feature View | Search PDB | Q13569  
    Molecule: DNA (28-MER)
    Polymer: 2 Type: dna Length: 28
    Chains: C
    Molecule: DNA (29-MER)
    Polymer: 3 Type: dna Length: 29
    Chains: D
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    HMU
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    HMU C5 H6 N2 O3
    5-HYDROXYMETHYL URACIL
    HMU:4FNC
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    AAB
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    AAB C5 H11 O7 P saccharide
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1875
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Hashimoto, H.,  Hong, S.,  Bhagwat, A.S.,  Zhang, X.,  Cheng, X.

    Deposition:   2012-06-19
    Release:   2012-09-19
    Last Modified (REVDAT):   2013-02-13
     
  •   Revision History    Hide
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    2012-11-21
    Citation
    2012-10-17
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.49
    R-Value: 0.226 (obs.)
    R-Free: 0.266
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 90.96 α = 90.00 
    b = 53.72 β = 96.49 
    c = 81.56 γ = 90.00