4FH7

Structure of DHP A in complex with 2,4,6-tribromophenol in 20% methanol

Structural Biology Knowledgebase: 4FH7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FH7

Classification: OXIDOREDUCTASE

Total Structure Weight: 33589.85

Macromolecule Entities
Molecule Chains Length Organism Details
Dehaloperoxidase A A, B 137 Amphitrite ornata Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TBP
Query on TBP

A 2,4,6-TRIBROMOPHENOL
C6 H3 Br3 O
BSWWXRFVMJHFBN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MOH
Query on MOH

A, B METHANOL
C H4 O
OKKJLVBELUTLKV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OXY
Query on OXY

A OXYGEN MOLECULE
O2
MYMOFIZGZYHOMD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TBP N/A in BindingDB
Ki: 510000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.229
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.57 α = 90.00
b = 67.27 β = 90.00
c = 68.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-05
  • Released Date: 2013-03-27
  • Deposition author(s): de Serrano, V.S., Franzen, S.

Revision History

  • 2013-04-24
    Type: Citation | Details: Citation update
  • 2013-04-17
    Type: Citation | Details: Citation update