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Dpo4 polymerase pre-insertion binary complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
DOI:10.2210/pdb4fbu/pdb   NDB ID: NA1828
4FBU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 95175.56
    Molecule: DNA polymerase IV
    Polymer: 1 Type: protein Length: 341
    Chains: A, B
    EC#: 2.7.7.7   
    Organism Sulfolobus solfataricus P2
    Gene Names dbh dpo4 SSO2448
    UniProtKB:   Protein Feature View | Search PDB | Q97W02  
    Molecule: DNA primer
    Polymer: 2 Type: dna Length: 13
    Chains: D, P
    Molecule: DNA template
    Polymer: 3 Type: dna Length: 14
    Chains: C, T
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus solfataricus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4FBT   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    DG8
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    DG8 C26 H23 N6 O7 P DG dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1828
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Kirouac, K.,  Basu, A.,  Ling, H.

    Deposition:   2012-05-23
    Release:   2013-06-12
    Last Modified (REVDAT):   2013-11-13
     
  •   Revision History    Hide
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    2013-11-13
    Citation
    2013-09-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.220 (obs.)
    R-Free: 0.261
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 52.77 α = 90.00 
    b = 181.46 β = 109.49 
    c = 52.74 γ = 90.00