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Crystal structure of bovine CD1d with bound C12-di-sulfatide
4F7C
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 92182.70
    Molecule: CD1D antigen, d polypeptide
    Polymer: 1 Type: protein Length: 283
    Chains: A, C
    Fragment: UNP residues 129-405
    Organism Bos taurus
    Gene Name CD1D
    UniProtKB:   Protein Feature View | Search PDB | A1L565  
    Molecule: Beta-2-microglobulin
    Polymer: 2 Type: protein Length: 98
    Chains: B, D
    Fragment: UNP residues 21-118
    Organism Bos taurus
    Gene Name B2M
    UniProtKB:   Protein Feature View | Search PDB | P01888  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine Expression System: Spodoptera frugiperda  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 6
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2AKR  Structural basis of sulfatide presentation by mouse CD1d 
    4F7E   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    0SG
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    0SG C36 H69 N O14 S2
    N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]- 3-hydroxyoctadec-4-en-2-yl}dodecanamide
    0SG:4F7C
    BMA
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    BMA C6 H12 O6
    BETA-D-MANNOSE
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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