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The 8S snRNP Assembly Intermediate
4F77
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
1VU2   1VU3   4F77  
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The complete entry has been assigned PDB ID 4V98 and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v98.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v98.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Splicing
    Structure Weight: 831765.37
    Molecule: Small nuclear ribonucleoprotein Sm D1
    Polymer: 1 Type: protein Length: 119
    Chains: A, I, Q, Y, g, o, w
    Organism: Homo sapiens
    Gene Name: Gene View for SNRPD1
    UniProtKB: Protein Feature View | Search PDB | P62314  
    Molecule: Small nuclear ribonucleoprotein Sm D2
    Polymer: 2 Type: protein Length: 118
    Chains: B, J, R, Z, h, p, x
    Organism: Homo sapiens
    Gene Names: Gene View for SNRPD2 Gene View for SNRPD1
    UniProtKB: Protein Feature View | Search PDB | P62316  
    Molecule: Small nuclear ribonucleoprotein E
    Polymer: 3 Type: protein Length: 92
    Chains: C, K, S, a, i, q, y
    Organism: Homo sapiens
    Gene Name: Gene View for SNRPE
    UniProtKB: Protein Feature View | Search PDB | P62304  
    Molecule: Small nuclear ribonucleoprotein F
    Polymer: 4 Type: protein Length: 86
    Chains: D, L, T, b, j, r, z
    Organism: Homo sapiens
    Gene Names: Gene View for SNRPF PBSCF
    UniProtKB: Protein Feature View | Search PDB | P62306  
    Molecule: LD23602p
    Polymer: 5 Type: protein Length: 124
    Chains: 1, E, M, U, c, k, s
    Fragment: UNP residues 1-122
    Organism: Drosophila melanogaster
    Gene Names: Smn CG16725
    UniProtKB: Protein Feature View | Search PDB | Q9VV74  
    Molecule: CG10419
    Polymer: 6 Type: protein Length: 247
    Chains: 2, F, N, V, d, l, t
    Organism: Drosophila melanogaster
    Gene Names: Gem2 CG10419
    UniProtKB: Protein Feature View | Search PDB | Q9VVX0  
    Molecule: Icln
    Polymer: 7 Type: protein Length: 186
    Chains: 3, G, O, W, e, m, u
    Organism: Drosophila melanogaster
    Gene Names: icln CG4924
    UniProtKB: Protein Feature View | Search PDB | A1ZAW5  
    Molecule: Small nuclear ribonucleoprotein G
    Polymer: 8 Type: protein Length: 76
    Chains: 4, H, P, X, f, n, v
    Organism: Homo sapiens
    Gene Names: Gene View for SNRPG PBSCG
    UniProtKB: Protein Feature View | Search PDB | P62308  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 6
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 7
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 8
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Part of PDB entry 4F77
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Grimm, C.,  Pelz, J.P.,  Schindelin, H.,  Diederichs, K.,  Kuper, J.,  Kisker, C.

    Deposition:   2012-05-15
    Release:   2013-02-27
    Last Modified (REVDAT):   2013-03-13
     
  •   Revision History    Hide
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    2013-03-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.10
    R-Value: 0.234 (obs.)
    R-Free: 0.256
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 150.93 α = 90.00 
    b = 356.81 β = 97.31 
    c = 230.75 γ = 90.00