Open ternary mismatch complex of R283K DNA polymerase beta with a dATP analog DOI:10.2210/pdb4f5p/pdb   NDB ID: NA1769

4F5P   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase , Lyase/dna Structure Weight: 48239.78 Molecule: DNA polymerase beta Polymer: 1 Type: protein Length: 335 Chains: A EC#: 2.7.7.7    4.2.99    Mutation: R283K Organism Homo sapiens Gene Name POLB UniProtKB:   Protein Feature View | Search PDB | P06746     Molecule: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') Polymer: 2 Type: dna Length: 16 Chains: T Organism synthetic construct Molecule: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3') Polymer: 3 Type: dna Length: 10 Chains: P Organism synthetic construct Molecule: DNA (5'-D(P*GP*TP*CP*GP*G)-3') Polymer: 4 Type: dna Length: 5 Chains: D Organism synthetic construct     Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy     Polymer: 4 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy         Related PDB Entries Hide Identifier Details 4F5N    4F5O    4F5Q    4F5R        Ligand Chemical Component Hide Identifier Formula Name Interactions F2A Search  Download  C11 H18 N5 O11 P3 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) F2A Search  Download  Ki: 5000 nM (99) - data from BindingDB   N/A in BindingMoad N/A in PDBbind     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam   GO Terms: 26 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA1769     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Freudenthal, B.D.,  Beard, W.A.,  Wilson, S.H. Deposition:   2012-05-13 Release:   2012-12-12     Revision History    Hide No revisions since initial release     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.85 R-Value: 0.207 (obs.) R-Free: 0.245 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 54.38 α = 90.00  b = 79.24 β = 105.49  c = 54.88 γ = 90.00      Molecule of the Month Hide DNA Polymerase