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Y-family DNA polymerase chimera Dpo4-Dpo4-Dbh
DOI:10.2210/pdb4f4z/pdb   NDB ID: NA1804
4F4Z
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 101307.58
    Molecule: DNA polymerase IV
    Polymer: 1 Type: protein Length: 361
    Chains: A, B
    EC#: 2.7.7.7   
    Organism Sulfolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
    Gene Names dbh Saci_0554 dpo4 SSO2448
    UniProtKB:   Protein Feature View | Search PDB | Q4JB80  

    UniProtKB:   Protein Feature View | Search PDB | Q97W02  
    Molecule: DNA (5'-D(*AP*GP*GP*GP*GP*GP*AP*AP*GP*CP*CP*G)-3')
    Polymer: 2 Type: dna Length: 12
    Chains: C, P
    Details: Primer DNA
    Molecule: DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*CP*GP*GP*CP*TP*TP*CP*CP*CP*CP*CP*T)-3')
    Polymer: 3 Type: dna Length: 19
    Chains: D, T
    Details: Template DNA
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus solfataricus, sulfolobus acidocaldarius   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4F4W   
    4F4X   
    4F4Y   
    4F50   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1804
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Pata, J.D.,  Wilson, R.C.

    Deposition:   2012-05-11
    Release:   2013-01-02
    Last Modified (REVDAT):   2013-02-13
     
  •   Revision History    Hide
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    2013-02-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.31
    R-Value: 0.188 (obs.)
    R-Free: 0.260
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 50.97 α = 75.60 
    b = 51.20 β = 82.97 
    c = 98.84 γ = 70.14