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Y-family DNA polymerase chimera Dbh-Dpo4-Dbh
DOI:10.2210/pdb4f4y/pdb   NDB ID: NA1803
4F4Y
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 104599.39
    Molecule: DNA polymerase IV
    Polymer: 1 Type: protein Length: 362
    Chains: A, B
    EC#: 2.7.7.7   
    Organism: Sulfolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
    Gene Names: dbh Saci_0554 dpo4 SSO2448
    UniProtKB: Protein Feature View | Search PDB | Q4JB80  

    UniProtKB: Protein Feature View | Search PDB | Q97W02  
    Molecule: DNA (5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*GP*CP*CP*C)-3')
    Polymer: 2 Type: dna Length: 16
    Chains: C, P
    Details: Primer DNA
    Organism: synthetic construct
    Molecule: DNA (5'-D(*TP*TP*AP*CP*GP*CP*CP*CP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3')
    Polymer: 3 Type: dna Length: 19
    Chains: D, T
    Details: Template DNA
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus acidocaldarius, sulfolobus solfataricus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4F4W   
    4F4X   
    4F4Z   
    4F50   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    DCP
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    DCP C9 H16 N3 O13 P3
    2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
    DCP:4F4Y
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1803
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Pata, J.D.,  Wilson, R.C.

    Deposition:   2012-05-11
    Release:   2013-01-02
    Last Modified (REVDAT):   2013-02-13
     
  •   Revision History    Hide
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    2013-02-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.34
    R-Value: 0.223 (obs.)
    R-Free: 0.259
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 53.08 α = 90.00 
    b = 103.39 β = 101.76 
    c = 112.99 γ = 90.00