4E6N

Crystal structure of bacterial Pnkp-C/Hen1-N heterodimer

Structural Biology Knowledgebase: 4E6N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E6N

Classification: PROTEIN BINDING

Total Structure Weight: 150983.26

Macromolecule Entities
Molecule Chains Length Organism Details
Metallophosphoesterase A, C 427 Ruminiclostridium thermocellum Gene Name(s): Cthe_2768
Methyltransferase type 12 B, D 230 Ruminiclostridium thermocellum Gene Name(s): Cthe_2767

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A, C ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.168
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.63 α = 81.38
b = 59.69 β = 87.82
c = 101.54 γ = 88.82

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-15
  • Released Date: 2012-08-01
  • Deposition author(s): Huang, R.H., Wang, P.

Revision History

  • 2012-08-29
    Type: Citation | Details: Citation update
  • 2012-08-15
    Type: Citation | Details: Citation update