4DS5

Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and rCTP in presence of Mg2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 4DS5

Classification: Transferase / DNA

Total Structure Weight: 148653.56


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase A, D 592 Geobacillus kaustophilus EC#: 2.7.7.7 IUBMB
Fragment: unp residues 287-878
Mutation: D598A, R823H
Gene Name(s): polA GK2730
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*C)-3') B, E 9 synthetic DNA Primer Strand
DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3') C, F 13 synthetic DNA Template Strand

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.176
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 93.88 α = 90.00
b = 108.86 β = 90.00
c = 150.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-17
  • Released Date: 2012-06-06
  • Deposition author(s): Wang, W., Beese, L.S.

Revision History

  • 2012-06-13
    Type: Database references
  • 2012-11-21
    Type: Database references