POP-OUT | CLOSE
 
Co-crystal structure of the PPIase domain of FKBP51, Rapamycin and the FRB fragment of mTOR
4DRI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Isomerase/transferase
    Structure Weight: 28355.68
    Molecule: Peptidyl-prolyl cis-trans isomerase FKBP5
    Polymer: 1 Type: protein Length: 144
    Chains: A
    EC#: 5.2.1.8   
    Fragment: FKBP51 Fk1 domain, UNP residues 1-140
    Organism: Homo sapiens
    Gene Names: Gene View for FKBP5 AIG6 FKBP51
    UniProtKB: Protein Feature View | Search PDB | Q13451  
    Molecule: Serine/threonine-protein kinase mTOR
    Polymer: 2 Type: protein Length: 98
    Chains: B
    EC#: 2.7.11.1   
    Fragment: FRB domain, UNP residues 2025-2114
    Organism: Homo sapiens
    Gene Names: Gene View for MTOR FRAP FRAP1 FRAP2 RAFT1 RAPT1
    UniProtKB: Protein Feature View | Search PDB | P42345  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4DRH   
    4DRJ   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    RAP
    Search 
    Download 
    RAP C51 H79 N O13
    RAPAMYCIN IMMUNOSUPPRESSANT DRUG
    RAP:4DRI
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    RAP
    Search 
    Download 
    RAP
    IC50: 0.1 - 3.5 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Maerz, A.M.,  Bracher, A.,  Hausch, F.

    Deposition:   2012-02-17
    Release:   2013-02-06
    Last Modified (REVDAT):   2013-03-27
     
  •   Revision History    Hide
    Mouse over text for details
    2013-03-27
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.45
    R-Value: 0.178 (obs.)
    R-Free: 0.206
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 59.50 α = 90.00 
    b = 59.55 β = 90.00 
    c = 67.79 γ = 90.00