4DPM

Structure of malonyl-coenzyme A reductase from crenarchaeota in complex with CoA

Structural Biology Knowledgebase: 4DPM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DPM

Classification: oxidoreductase

Total Structure Weight: 242411.64

Macromolecule Entities
Molecule Chains Length Organism Details
Malonyl-CoA/succinyl-CoA reductase A, B, C..., D, E, FA, B, C, D, E, F 359 Sulfolobus tokodaii EC#: 1.2.1.75 IUBMB
Gene Name(s): mcr scr STK_21710
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A, B, C, D, E, F COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.198
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 111.63 α = 90.00
b = 137.62 β = 90.00
c = 362.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-13
  • Released Date: 2012-12-26
  • Deposition author(s): Demmer, U., Warkentin, E., Srivastava, A., Kockelkorn, D., Fuchs, G., Ermler, U.

Revision History

  • 2013-03-20
    Type: Citation | Details: Citation update
  • 2013-01-30
    Type: Citation | Details: Citation update
  • 2013-01-16
    Type: Citation | Details: Citation update