4DN4

Crystal structure of the complex between cnto888 fab and mcp-1 mutant p8a

Structural Biology Knowledgebase: 4DN4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DN4

Classification: IMMUNE SYSTEM

Total Structure Weight: 56742.86

Macromolecule Entities
Molecule Chains Length Organism Details
CNTO888 LIGHT CHAIN L 216 Homo sapiens
CNTO888 HEAVY CHAIN H 228 Homo sapiens
C-C motif chemokine 2 M 76 Homo sapiens Mutation: P8A
Gene Name(s): CCL2 Gene View MCP1 SCYA2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

H, L ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.196
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 136.01 α = 90.00
b = 136.01 β = 90.00
c = 109.29 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-08
  • Released Date: 2012-10-03
  • Deposition author(s): Obmolova, G., Teplyakov, A., Malia, T., Grygiel, T., Sweet, R., Snyder L., Gilliland, G.

Revision History

  • 2012-10-03
    Type: Citation | Details: Citation update