4DKE

Crystal Structure of Human Interleukin-34 Bound to FAb1.1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 4DKE

Classification: CYTOKINE / IMMUNE SYSTEM

Total Structure Weight: 141167.91

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-34 A, B 190 Homo sapiens Fragment: active core
Gene Name(s): IL34 Gene View C16orf77
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FAb1.1 Heavy Chain H, I 230 Homo sapiens
FAb1.1 Light Chain L, M 214 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.231
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 105.55 α = 90.00
b = 122.46 β = 90.00
c = 149.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-03
  • Released Date: 2012-04-11
  • Deposition author(s): Ma, X., Chen, Y., Stawicki, S., Wu, Y., Bazan, J.F., Starovasnik, M.A.

Revision History

  • Version 1_0: 2012-04-11

    Type: Initial release

  • Version 1_1: 2012-04-25

    Type: Database references