4DG9

Structure of holo-PA1221, an NRPS protein containing adenylation and PCP domains bound to vinylsulfonamide inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4DG9

Classification: LIGASE / Inhibitor

Total Structure Weight: 68625.28

Macromolecule Entities
Molecule Chains Length Organism Details
PA1221 A 620 Pseudomonas aeruginosa EC#: 6.2.1 IUBMB
Gene Name(s): PA1221
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DG9
Query on DG9

A 5'-({[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy- 3,3-dimethyl-4-{[oxido(oxo)phosphonio]oxy}butanoyl]- beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentyl]sulfonyl}amino)- 5'-deoxyadenosine
C27 H46 N9 O11 P S2
NKPOAMLNYLWQKJ-AWSFPXBRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.182
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 53.19 α = 90.00
b = 231.18 β = 90.00
c = 122.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-25
  • Released Date: 2012-05-02
  • Deposition author(s): Mitchell, C.A., Shi, C., Aldrich, C.C., Gulick, A.M.

Revision History

No revisions since initial release