4DCT

Crystal Structure of B. subtilis EngA in complex with half-occupacy GDP

Structural Biology Knowledgebase: 4DCT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DCT

Classification: HYDROLASE

Total Structure Weight: 51982.90

Macromolecule Entities
Molecule Chains Length Organism Details
GTP-BINDING PROTEIN ENGA A 456 Bacillus subtilis Gene Name(s): der engA yphC BSU22840

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GDP N/A in BindingDB
Kd: 8000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.224
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.76 α = 90.00
b = 65.26 β = 90.00
c = 112.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-18
  • Released Date: 2012-11-14
  • Deposition author(s): Reiser, J.-B., Housset, D., Foucher, A.-E., Jault, J.-M.

Revision History

No revisions since initial release