4DCJ

Crystal structure of caspase 3, L168D mutant

Structural Biology Knowledgebase: 4DCJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DCJ

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 59739.99

Macromolecule Entities
Molecule Chains Length Organism Details
Caspase-3 subunit p17 A, D 147 Homo sapiens EC#: 3.4.22.56 IUBMB
Mutation: L168D
Gene Name(s): CASP3 Gene View CPP32
Caspase-3 subunit p12 B, E 108 Homo sapiens EC#: 3.4.22.56 IUBMB
Gene Name(s): CASP3 Gene View CPP32
Caspase Inhibitor AC-DEVD-CHO C, F 5 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000422 (ACE,VAL,ASP,GLU,ASJ) C, F Ac-Asp-Glu-Val-Asp-Aldehyde Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.190
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.83 α = 90.00
b = 68.55 β = 101.88
c = 93.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-17
  • Released Date: 2012-12-12
  • Deposition author(s): Chung, S.J., Kang, H.J., Kim, S.J.

Revision History

No revisions since initial release