4D9Q

Inhibiting Alternative Pathway Complement Activation by Targeting the Exosite on Factor D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 4D9Q

Classification: HYDROLASE / IMMUNE SYSTEM

Total Structure Weight: 143365.78

Macromolecule Entities
Molecule Chains Length Organism Details
Factor D A, B 228 Macaca mulatta Mutation: L47V
Gene Name(s): CFD Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Anti-Factor D, light chain D, L 213 Homo sapiens
Anti-Factor D, heavy chain E, H 217 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, D, E, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, D, H, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.189
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 182.33 α = 90.00
b = 80.76 β = 107.19
c = 142.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-11
  • Released Date: 2012-02-22
  • Deposition author(s): Murray, J.M., Wiesmann, C.

Revision History

  • Version 1_0: 2012-02-22

    Type: Initial release

  • Version 1_1: 2012-03-14

    Type: Database references

  • Version 1_2: 2012-05-02

    Type: Database references

  • Version 1_3: 2014-04-02

    Type: Structure summary

  • Version 1_4: 2017-08-02

    Type: Refinement description, Source and taxonomy