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Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS
4D8R
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
4D8Q   4D8R  
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The complete entry has been assigned PDB ID 4V94 and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v94.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v94.xml.gz
 
Primary Citation
 
 
Original Entry Used for Re-refinement
3P9D   3P9E  

The crystal structure of yeast CCT reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins.
Dekker, C., Roe, S.M., McCormack, E.A., Beuron, F., Pearl, L.H., Willison, K.R.
(2011) Embo J. 30: 3078
PubMed
 
  •   Molecular Description Hide
    Classification: Chaperone
    Structure Weight: 976378.04
    Molecule: T-complex protein 1 subunit zeta
    Polymer: 1 Type: protein Length: 546
    Chains: f, n
    Organism Saccharomyces cerevisiae S288c
    Gene Names CCT6 TCP20 TCP6 YDR188W YD9395.21
    UniProtKB:   Protein Feature View | Search PDB | P39079  
    Molecule: T-complex protein 1 subunit theta
    Polymer: 2 Type: protein Length: 568
    Chains: h, p
    Organism Saccharomyces cerevisiae S288c
    Gene Names CCT8 YJL008C J1374
    UniProtKB:   Protein Feature View | Search PDB | P47079  
    Molecule: T-complex protein 1 subunit eta
    Polymer: 3 Type: protein Length: 550
    Chains: g, o
    Organism Saccharomyces cerevisiae S288c
    Gene Names CCT7 YJL111W J0804
    UniProtKB:   Protein Feature View | Search PDB | P42943  
    Molecule: T-complex protein 1 subunit epsilon
    Polymer: 4 Type: protein Length: 562
    Chains: e, m
    Organism Saccharomyces cerevisiae S288c
    Gene Names CCT5 TCP5 YJR064W J1752
    UniProtKB:   Protein Feature View | Search PDB | P40413  
    Molecule: T-complex protein 1 subunit beta
    Polymer: 5 Type: protein Length: 527
    Chains: b, j
    Organism Saccharomyces cerevisiae S288c
    Gene Names CCT2 BIN3 TCP2 YIL142W
    UniProtKB:   Protein Feature View | Search PDB | P39076  
    Molecule: T-complex protein 1 subunit delta
    Polymer: 6 Type: protein Length: 528
    Chains: d, l
    Mutation: G345D
    Organism Saccharomyces cerevisiae S288c
    Gene Names CCT4 ANC2 TCP4 YDL143W
    UniProtKB:   Protein Feature View | Search PDB | P39078  
    Molecule: T-complex protein 1 subunit alpha
    Polymer: 7 Type: protein Length: 559
    Chains: a, i
    Organism Saccharomyces cerevisiae S288c
    Gene Names TCP1 CCT1 YDR212W YD8142.13 YD8142B.04
    UniProtKB:   Protein Feature View | Search PDB | P12612  
    Molecule: T-complex protein 1 subunit gamma
    Polymer: 8 Type: protein Length: 590
    Chains: c, k
    Organism Saccharomyces cerevisiae S288c
    Gene Names CCT3 BIN2 TCP3 YJL014W J1336
    UniProtKB:   Protein Feature View | Search PDB | P39077  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ADP
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    ADP C10 H15 N5 O10 P2
    ADENOSINE-5'-DIPHOSPHATE
    BEF
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    BEF Be F3
    BERYLLIUM TRIFLUORIDE ION
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
PDB entry 4D8Q