Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS DOI:10.2210/pdb4d8q/pdb

4D8Q   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 4D8Q   4D8R     Download All Files      Primary Citation     Original Entry Used for Re-refinement 3P9D   3P9E   The crystal structure of yeast CCT reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins. Dekker, C., Roe, S.M., McCormack, E.A., Beuron, F., Pearl, L.H., Willison, K.R. (2011) Embo J. 30: 3078 PubMed     Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Chaperone Structure Weight: 976378.04 Molecule: T-complex protein 1 subunit zeta Polymer: 1 Type: protein Length: 546 Chains: F, N Organism Saccharomyces cerevisiae S288c Gene Names CCT6 TCP20 TCP6 YDR188W YD9395.21 UniProtKB:   Protein Feature View | Search PDB | P39079     Molecule: T-complex protein 1 subunit theta Polymer: 2 Type: protein Length: 568 Chains: H, P Organism Saccharomyces cerevisiae S288c Gene Names CCT8 YJL008C J1374 UniProtKB:   Protein Feature View | Search PDB | P47079     Molecule: T-complex protein 1 subunit eta Polymer: 3 Type: protein Length: 550 Chains: G, O Organism Saccharomyces cerevisiae S288c Gene Names CCT7 YJL111W J0804 UniProtKB:   Protein Feature View | Search PDB | P42943     Molecule: T-complex protein 1 subunit epsilon Polymer: 4 Type: protein Length: 562 Chains: E, M Organism Saccharomyces cerevisiae S288c Gene Names CCT5 TCP5 YJR064W J1752 UniProtKB:   Protein Feature View | Search PDB | P40413     Molecule: T-complex protein 1 subunit beta Polymer: 5 Type: protein Length: 527 Chains: B, J Organism Saccharomyces cerevisiae S288c Gene Names CCT2 BIN3 TCP2 YIL142W UniProtKB:   Protein Feature View | Search PDB | P39076     Molecule: T-complex protein 1 subunit delta Polymer: 6 Type: protein Length: 528 Chains: D, L Mutation: G345D Organism Saccharomyces cerevisiae S288c Gene Names CCT4 ANC2 TCP4 YDL143W UniProtKB:   Protein Feature View | Search PDB | P39078     Molecule: T-complex protein 1 subunit alpha Polymer: 7 Type: protein Length: 559 Chains: A, I Organism Saccharomyces cerevisiae S288c Gene Names TCP1 CCT1 YDR212W YD8142.13 YD8142B.04 UniProtKB:   Protein Feature View | Search PDB | P12612     Molecule: T-complex protein 1 subunit gamma Polymer: 8 Type: protein Length: 590 Chains: C, K Organism Saccharomyces cerevisiae S288c Gene Names CCT3 BIN2 TCP3 YJL014W J1336 UniProtKB:   Protein Feature View | Search PDB | P39077         Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae   Polymer: 3 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae   Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Saccharomyces cerevisiae       Ligand Chemical Component Hide Identifier Formula Name Interactions ADP Search  Download  C10 H15 N5 O10 P2 ADENOSINE-5'-DIPHOSPHATE   Ligand Explorer BEF Search  Download  Be F3 BERYLLIUM TRIFLUORIDE ION   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 8 Domains - data from Pfam   GO Terms: 58 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... PDB entry 4D8Q         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Leitner, A.,  Joachimiak, L.A.,  Bracher, A.,  Walzthoeni, T.,  Chen, B.,  Monkemeyer, L.,  Pechmann, S.,  Holmes, S.,  Cong, Y.,  Ma, B.,  Ludtke, S.,  Chiu, W.,  Hartl, F.U.,  Aebersold, R.,  Frydman, J. Deposition:   2012-01-11 Release:   2012-05-23 Last Modified (REVDAT):   2012-06-13     Revision History    Hide Mouse over text for details 2012-06-13 Refinement description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.80 R-Value: 0.259 (obs.) R-Free: 0.305 Space Group: P 1 Unit Cell:   Length [Å] Angles [°] a = 159.10 α = 85.23  b = 162.54 β = 81.15  c = 268.10 γ = 61.17