4BRE

Legionella pneumophila NTPDase1 crystal form II (closed) in complex with transition state mimic adenosine 5'phosphovanadate

Structural Biology Knowledgebase: 4BRE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BRE

Classification: HYDROLASE

Total Structure Weight: 85154.49

Macromolecule Entities
Molecule Chains Length Organism Details
ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I A, B 368 Legionella pneumophila Fragment: RESIDUES 35-393
Mutation: E137D, A149V
Gene Name(s): lpg1905

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
50T
Query on 50T

A, B ADENOSINE-5'-PHOSPHOVANADATE
C10 H17 N5 O11 P V
GRUHEBDEJPYXQQ-AZGWGOJFSA-I
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A, B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.172
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 62.68 α = 90.00
b = 86.20 β = 105.94
c = 70.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-04
  • Released Date: 2013-07-17
  • Deposition author(s): Zebisch, M., Schaefer, P., Lauble, P., Straeter, N.

Revision History

  • 2013-12-25
    Type: Function and keywords | Details: KEYWDS
  • 2013-08-28
    Type: Citation | Details: JRNL