Legionella pneumophila NTPDase1 crystal form II (closed) in complex with transition state mimic adenosine 5'phosphovanadate
4BRE
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 85154.44
    Molecule: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I
    Polymer: 1 Type: protein Length: 368
    Chains: A, B
    Fragment: RESIDUES 35-393
    Organism: Legionella pneumophila
    Gene Name: lpg1905
    UniProtKB: Protein Feature View | Search PDB | Q5ZUA2  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Legionella pneumophila   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4BQZ   RAT NTPDASE2 IN COMPLEX WITH MG GMPPNP 
    4BR0   RAT NTPDASE2 IN COMPLEX WITH CA AMPNP 
    4BR2   RAT NTPDASE2 IN COMPLEX WITH CA UMPPNP 
    4BR4   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM I, OPEN, APO 
    4BR5   RNNTPDASE2 IN COMPLEX WITH ZNAMPPNP 
    4BR7   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM I, OPEN, AMPNP COMPLEX 
    4BR9   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II, CLOSED, APO 
    4BRA   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II, CLOSED, MG AMPPNP COMPLEX 
    4BRC   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II, CLOSED, MG AMPNP COMPLEX 
    4BRD   LEGIONELLA PNEUMOPHILA NTPDASE1 Q193E CRYSTAL FORM II, CLOSED, MG AMPPNP COMPLEX 
    4BRF   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II (CLOSED) IN COMPLEX WITH A DISTORTED ORTHOMOLYBDATE ION AND AMP 
    4BRG   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II (CLOSED) IN COMPLEX WITH MG GMPPNP 
    4BRH   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II (CLOSED) IN COMPLEX WITH MG AND THIAMINE PHOSPHOVANADATE 
    4BRI   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II (CLOSED) IN COMPLEX WITH MG UMPPNP 
    4BRK   LEGIONELLA PNEUMOPHILA NTPDASE1 N302Y VARIANT CRYSTAL FORM III (CLOSED) IN COMPLEX WITH MG UMPPNP 
    4BRL   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM III (CLOSED) IN COMPLEX WITH TRANSITION STATE MIMI GUANOSINE 5'- PHOSPHOVANADATE 
    4BRM   SULFUR SAD PHASING OF THE LEGIONELLA PNEUMOPHILA NTPDASE1 - CRYSTAL FORM III (CLOSED) IN COMPLEX WITH SULFATE 
    4BRN   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM III (CLOSED) IN COMPLEX WITH MG AMP 
    4BRO   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM IV (PART- OPEN) 
    4BRP   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM V (PART- OPEN) 
    4BRQ   LEGIONELLA PNEUMOPHILA NTPDASE1 CRYSTAL FORM II, CLOSED, IN COMPLEX WITH TWO PHOSPHATES BOUND TO ACTIVE SITE MG AND PRODUCT AMP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    50T
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    50T C10 H17 N5 O11 P V
    ADENOSINE-5'-PHOSPHOVANADATE
    50T:4BRE
    MES
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    MES C6 H13 N O4 S
    2-(N-MORPHOLINO)-ETHANESULFONIC ACID
    MES:4BRE
    MG
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    MG Mg
    MAGNESIUM ION
    NA
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    NA Na
    SODIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Zebisch, M.,  Schaefer, P.,  Lauble, P.,  Straeter, N.

    Deposition:   2013-06-04
    Release:   2013-07-17
    Last Modified (REVDAT):   2013-12-25
     
  •   Revision History    Hide
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    2013-12-25
    Function and keywords
    2013-08-28
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.60
    R-Value: 0.173 (obs.)
    R-Free: 0.208
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 62.68 α = 90.00 
    b = 86.20 β = 105.94 
    c = 70.88 γ = 90.00