The PR2 Photocycle Intermediate of Photoactive Yellow Protein DOI:10.2210/pdb4bbu/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Signaling Protein Structure Weight: 14052.86 Molecule: PHOTOACTIVE YELLOW PROTEIN Polymer: 1 Type: protein Length: 125 Chains: A Organism Halorhodospira halophila Gene Name pyp UniProtKB:   Protein Feature View | Search PDB | P16113         Source Hide Polymer: 1 Scientific Name: Halorhodospira halophila   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1D7E  CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVEYELLOW PROTEIN  1F98  CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANTT50V  1F9I  CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANTY42F  1GSV  CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN  1GSW  CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN G51S MUTANT  1GSX  CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN G47S/G51S MUTANT  1KOU  CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEINRECONSTITUTED WITH CAFFEIC ACID AT 1.16 A RESOLUTION  1NWZ  PYP ULTRA-HIGH RESOLUTION STRUCTURE OF A BACTERIALPHOTORECEPTOR  1ODV  PHOTOACTIVE YELLOW PROTEIN 1-25 DELETION MUTANT  1OT6  CRYOTRAPPED CRYSTAL STRUCTURE OF THE E46Q MUTANT OFPHOTOACTIVE YELLOW PROTEIN UNDER CONTINUOUS ILLUMINATIONAT 110K  1OT9  CRYOTRAPPED STATE IN WILD TYPE PHOTOACTIVE YELLOW PROTEIN,INDUCED WITH CONTINUOUS ILLUMINATION AT 110K  1OTA  E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K  1OTB  WILD TYPE PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K  1OTD  STRONG HYDROGEN BONDS IN PHOTOACTIVE YELLOW PROTEIN ANDTHEIR ROLE IN ITS PHOTOCYCLE  1OTE  E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 AT 110K  1OTI  E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 AT 295K  1S1Y  PHOTOACTIVATED CHROMOPHORE CONFORMATION IN PHOTOACTIVEYELLOW PROTEIN (E46Q MUTANT) FROM 10 MICROSECONDS TO 3MILLISECONDS  1S1Z  PHOTOACTIVATED CHROMOPHORE CONFORMATION IN PHOTOACTIVEYELLOW PROTEIN (E46Q MUTANT) FROM 10 TO 500 NANOSECONDS  1S4R  STRUCTURE OF A REACTION INTERMEDIATE IN THE PHOTOCYCLE OFPYP EXTRACTED BY A SVD-DRIVEN ANALYSIS  1S4S  REACTION INTERMEDIATE IN THE PHOTOCYCLE OF PYP, INTERMEDIATE OCCUPIED BETWEEN 100 MICRO-SECONDS TO 5 MILLI-SECONDS  1T18  EARLY INTERMEDIATE IE1 FROM TIME-RESOLVED CRYSTALLOGRAPHYOF THE E46Q MUTANT OF PYP  1T19  EARLY INTERMEDIATE IE2 FROM TIME-RESOLVED CRYSTALLOGRAPHYOF THE E46Q MUTANT OF PYP  1T1A  LATE INTERMEDIATE IL1 FROM TIME-RESOLVED CRYSTALLOGRAPHY OFTHE E46Q MUTANT OF PYP  1T1B  LATE INTERMEDIATE IL2 FROM TIME-RESOLVED CRYSTALLOGRAPHY OFTHE E46Q MUTANT OF PYP  1T1C  LATE INTERMEDIATE IL3 FROM TIME-RESOLVED CRYSTALLOGRAPHY OFTHE E46Q MUTANT OF PYP  1TS0  STRUCTURE OF THE PB1 INTERMEDIATE FROM TIME-RESOLVED LAUECRYSTALLOGRAPHY  1TS6  STRUCTURE OF THE PB2 INTERMEDIATE FROM TIME-RESOLVED LAUECRYSTALLOGRAPHY  1TS7  STRUCTURE OF THE PR CIS WOBBLE AND PR E46Q INTERMEDIATESFROM TIME-RESOLVED LAUE CRYSTALLOGRAPHY  1TS8  STRUCTURE OF THE PR CIS PLANAR INTERMEDIATE FROM TIME -RESOLVED LAUE CRYSTALLOGRAPHY  1UGU  CRYSTAL STRUCTURE OF PYP E46Q MUTANT  1UWN  THE INITIAL EVENTS IN THE PHOTOCYCLE OF PHOTOACTIVE YELLOW PROTEIN: A COMMON MECHANISM ON LIGHT ACTIVATION IN PHOTORECEPTOR PROTEINS  1UWP  INITIAL EVENTS IN THE PHOTOCYCLE OF PHOTOACTIVE YELLOW PROTEIN  1XFN  NMR STRUCTURE OF THE GROUND STATE OF THE PHOTOACTIVE YELLOWPROTEIN LACKING THE N-TERMINAL PART  1XFQ  STRUCTURE OF THE BLUE SHIFTED INTERMEDIATE STATE OF THEPHOTOACTIVE YELLOW PROTEIN LACKING THE N-TERMINAL PART  2D01  WILD TYPE PHOTOACTIVE YELLOW PROTEIN, P65 FORM  2D02  R52Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 FORM  2PHY  PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED) 2PHY 3  2PYP  PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED  2PYR  PHOTOACTIVE YELLOW PROTEIN, 1 NANOSECOND INTERMEDIATE (287K)  3PHY  PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES  3PYP  PHOTOACTIVE YELLOW PROTEIN, CRYOTRAPPED EARLY LIGHT CYCLEINTERMEDIATE  4B9O  THE PR0 PHOTOCYCLE INTERMEDIATE OF PHOTOACTIVE YELLOW PROTEIN  4BBT  THE PR1 PHOTOCYCLE INTERMEDIATE OF PHOTOACTIVE YELLOW PROTEIN  4BBV  THE PB0 PHOTOCYCLE INTERMEDIATE OF PHOTOACTIVE YELLOW PROTEIN      Ligand Chemical Component Hide Identifier Formula Name Interactions HC4 Search  Download  C9 H8 O3 4'-HYDROXYCINNAMIC ACID   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 2 Domains - data from Pfam   GO Terms: 7 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Schotte, F.,  Cho, H.S.,  Kaila, V.R.I.,  Kamikubo, H.,  Dashdorj, N.,  Henry, E.R.,  Graber, T.J.,  Henning, R.,  Wulff, M.,  Hummer, G.,  Kataoka, M.,  Anfinrud, P.A. Deposition:   2012-09-27 Release:   2012-11-14 Last Modified (REVDAT):   2012-12-05     Revision History    Hide Mouse over text for details 2012-12-05 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.60 R-Value: 0.167 (obs.) R-Free: 0.218 Space Group: P 63 Unit Cell:   Length [Å] Angles [°] a = 66.83 α = 90.00  b = 66.83 β = 90.00  c = 40.95 γ = 120.00