Thrombin in complex with inhibitor DOI:10.2210/pdb4bah/pdb

4BAH   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 36037.17 Molecule: THROMBIN LIGHT CHAIN Polymer: 1 Type: protein Length: 36 Chains: A EC#: 3.4.21.5    Organism Homo sapiens Gene Name F2 UniProtKB:   Protein Feature View | Search PDB | P00734     Molecule: THROMBIN HEAVY CHAIN Polymer: 2 Type: protein Length: 259 Chains: B EC#: 3.4.21.5    Organism Homo sapiens Gene Name F2 UniProtKB:   Protein Feature View | Search PDB | P00734   Molecule: HIRUDIN VARIANT-1 Polymer: 3 Type: protein Length: 12 Chains: D Fragment: RESIDUES 62-71 Organism Hirudo medicinalis UniProtKB:   Protein Feature View | Search PDB | P01050         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human   Polymer: 3 Scientific Name: Synthetic construct (Hirudo medicinalis)   Taxonomy         Related PDB Entries Hide Identifier Details 4BAK  THROMBIN IN COMPLEX WITH INHIBITOR  4BAM  THROMBIN IN COMPLEX WITH INHIBITOR  4BAN  THROMBIN IN COMPLEX WITH INHIBITOR  4BAO  THROMBIN IN COMPLEX WITH INHIBITOR  4BAQ  THROMBIN IN COMPLEX WITH INHIBITOR      Ligand Chemical Component Hide Identifier Formula Name Interactions MEL Search  Download  C22 H31 N5 O4 [((1R)-2-{(2S)-2-[({4-[AMINO(IMINO)METHYL]BENZYL}AMINO)CARBONYL]AZETIDINYL}- 1-CYCLOHEXYL-2-OXOETHYL)AMINO]ACETIC ACID   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) MEL Search  Download  IC50: 4.7 - 4700 nM (100) - data from BindingDB   Ki: 1.2 - 2 nM (100) - data from BindingDB   N/A in BindingMoad N/A in PDBbind     Modified Residues Hide Identifier Formula Parent Type TYS Search  C9 H11 N O6 S TYR lPeptideLinking     External Domain Annotations Hide Pfam Classification: 2 Domains - data from Pfam   GO Terms: 5 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Xue, Y.,  Musil, D. Deposition:   2012-09-14 Release:   2013-01-16 Last Modified (REVDAT):   2013-03-13     Revision History    Hide Mouse over text for details 2013-03-13 Binding sites and description 2013-02-20 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.94 R-Value: 0.162 (obs.) R-Free: 0.193 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 69.41 α = 90.00  b = 71.51 β = 100.34  c = 72.16 γ = 90.00      Molecule of the Month Hide Thrombin Trypsin Serpins Tissue Factor Fibrin