Crystal Structure of Agd31B, alpha-transglucosylase, complexed with 5F-alpha-GlcF DOI:10.2210/pdb4ba0/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 93876.42 Molecule: ALPHA-GLUCOSIDASE, PUTATIVE, ADG31B Polymer: 1 Type: protein Length: 817 Chains: A EC#: 3.2.1.20    Organism Cellvibrio japonicus Gene Names agd31B CJA_3248 UniProtKB:   Protein Feature View | Search PDB | B3PEE6         Source Hide Polymer: 1 Scientific Name: Cellvibrio japonicus   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 4B9Y  CRYSTAL STRUCTURE OF APO AGD31B, ALPHA-TRANSGLUCOSYLASE IN GLYCOSIDE HYDROLASE FAMILY 31  4B9Z  CRYSTAL STRUCTURE OF AGD31B, ALPHA-TRANSGLUCOSYLASE, COMPLEXED WITH ACARBOSE      Ligand Chemical Component Hide Identifier Formula Name Interactions 5GF Search  Download  C6 H11 F O6 5-FLUORO-BETA-D-GLUCOPYRANOSE   Ligand Explorer ARG Search  Download  C6 H15 N4 O2 ARGININE   Ligand Explorer EDO Search  Download  C2 H6 O2 1,2-ETHANEDIOL   Ligand Explorer PEG Search  Download  C4 H10 O3 DI(HYDROXYETHYL)ETHER   Ligand Explorer PGE Search  Download  C6 H14 O4 TRIETHYLENE GLYCOL   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 2 Domains - data from Pfam   GO Terms: 5 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Larsbrink, J.,  Izumi, A.,  Hemsworth, G.R.,  Davies, G.J.,  Brumer, H. Deposition:   2012-09-09 Release:   2012-11-14 Last Modified (REVDAT):   2013-01-16     Revision History    Hide Mouse over text for details 2013-01-16 Citation 2012-11-21 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.85 R-Value: 0.168 (obs.) R-Free: 0.193 Space Group: P 6 2 2 Unit Cell:   Length [Å] Angles [°] a = 197.23 α = 90.00  b = 197.23 β = 90.00  c = 103.06 γ = 120.00