4B3D

Humanised monomeric RadA in complex with 5-methyl indole

Structural Biology Knowledgebase: 4B3D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.179

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B3D

Classification: HYDROLASE

Total Structure Weight: 51719.25

Macromolecule Entities
Molecule Chains Length Organism Details
DNA REPAIR AND RECOMBINATION PROTEIN RADA A, C 231 Pyrococcus furiosus Fragment: ATPASE
Mutation: I169M, Y201A, V202Y, K221M, I300N
Gene Name(s): radA PF1926

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5MI
Query on 5MI

A, C 5-METHYL INDOLE
C9 H9 N
YPKBCLZFIYBSHK-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PO4
Query on PO4

A, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
5MI Kd: 2100000 nM (92) BindingDB

Kd: 2100000 nM  BindingMOAD
Kd: 2100000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.179
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.28 α = 90.00
b = 87.25 β = 91.50
c = 62.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-23
  • Released Date: 2013-02-06
  • Deposition author(s): Scott, D.E., Ehebauer, M.T., Pukala, T., Marsh, M., Blundell, T.L., Venkitaraman, A.R., Abell, C., Hyvonen, M.

Revision History

  • 2013-02-27
    Type: Citation | Details: JRNL