4B2Y

Probing the active center of catalase-phenol oxidase from Scytalidium thermophilum

Structural Biology Knowledgebase: 4B2Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 4B2Y

Classification: OXIDOREDUCTASE

Total Structure Weight: 319848.72

Macromolecule Entities
Molecule Chains Length Organism Details
CATALASE-PHENOL OXIDASE A, B, C, D 719 Scytalidium thermophilum EC#: 1.11.1.6 IUBMB
Details: COVALENT BOND CYS123 TO HIS83 CE1
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.150
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 201.32 α = 90.00
b = 121.21 β = 115.54
c = 124.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-19
  • Released Date: 2013-04-10
  • Deposition author(s): Yuzugullu, Y., Trinh, C.H., Pearson, A.R., Ogel, Z.B., McPherson, M.J.

Revision History

  • 2013-04-17
    Type: Citation | Details: JRNL