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Unprecedented sculpting of DNA at abasic sites by DNA glycosylase homolog Mag2
DOI:10.2210/pdb4b21/pdb   NDB ID: NA2168
4B21
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 33137.55
    Molecule: PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE 2
    Polymer: 1 Type: protein Length: 232
    Chains: A
    EC#: 3.2.2.21   
    Organism: Schizosaccharomyces pombe
    Gene Names: mag2 SPBC23G7.11
    UniProtKB: Protein Feature View | Search PDB | O94468  
    Molecule: 5'-D(*GP*CP*TP*AP*CP*3DRP*GP*AP*TP*CP*GP)-3'
    Polymer: 2 Type: dna Length: 11
    Chains: X
    Organism: synthetic construct
    Molecule: 5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP)-3'
    Polymer: 3 Type: dna Length: 10
    Chains: Y
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Schizosaccharomyces pombe   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4B22  UNPRECEDENTED SCULPTING OF DNA AT ABASIC SITES BY DNA GLYCOSYLASE HOMOLOG MAG2 
    4B23  UNPRECEDENTED SCULPTING OF DNA AT ABASIC SITES BY DNA GLYCOSYLASE HOMOLOG MAG2 
    4B24  UNPRECEDENTED SCULPTING OF DNA AT ABASIC SITES BY DNA GLYCOSYLASE HOMOLOG MAG2 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BGC
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    BGC C6 H12 O6
    BETA-D-GLUCOSE
    BGC:4B21
    PO4
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    PO4 O4 P
    PHOSPHATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
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    3DR C5 H11 O6 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2168
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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