4AYB

RNAP at 3.2Ang


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 4AYB

Classification: TRANSFERASE

Total Structure Weight: 406665.53

Macromolecule Entities
Molecule Chains Length Organism Details
DNA-DIRECTED RNA POLYMERASE A 880 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO1N SUBUNIT
Gene Name(s): rpo1N
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE B 1131 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO2
Gene Name(s): rpo2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE C 395 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO1C
Gene Name(s): rpo1C rpoA2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE D 265 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO3
Gene Name(s): rpo3 rpoD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE E 180 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO7
Gene Name(s): rpo7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE F 113 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPOF
Gene Name(s): rpo4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE G 132 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO8
Gene Name(s): rpo8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE H 84 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO5
Gene Name(s): rpo5 rpoH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE K 95 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO6
Gene Name(s): rpo6 rpoK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE L 92 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO11
Gene Name(s): rpo11 rpoL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE N 66 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO10
Gene Name(s): rpo10 rpoN
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE P 48 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO12
Gene Name(s): rpo12 rpoP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE Q 104 Sulfolobus shibatae EC#: 2.7.7.6 IUBMB
Details: RPO13
Gene Name(s): rpo13
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

D IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, N, P ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.243
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 195.73 α = 90.00
b = 212.41 β = 90.00
c = 128.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-19
  • Released Date: 2012-08-08
  • Deposition author(s): Wojtas, M.N., Mogni, M., Millet, O., Bell, S.D., Abrescia, N.G.A.

Revision History

  • 2012-08-15
    Type: Atomic model, Derived calculations, Non-polymer description, Other
  • 2012-09-05
    Type: Atomic model
  • 2012-11-07
    Type: Database references