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RNAP at 3.2Ang
4AYB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 406668.53
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 1 Type: protein Length: 880
    Chains: A
    EC#: 2.7.7.6   
    Details: RPO1N SUBUNIT
    Organism: Sulfolobus shibatae
    Gene Name: rpo1N
    UniProtKB: Protein Feature View | Search PDB | B8YB53  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 2 Type: protein Length: 1131
    Chains: B
    EC#: 2.7.7.6   
    Details: RPO2
    Organism: Sulfolobus shibatae
    Gene Name: rpo2
    UniProtKB: Protein Feature View | Search PDB | B8YB55  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 3 Type: protein Length: 395
    Chains: C
    EC#: 2.7.7.6   
    Details: RPO1C
    Organism: Sulfolobus shibatae
    Gene Names: rpo1C rpoA2
    UniProtKB: Protein Feature View | Search PDB | B8YB54  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 4 Type: protein Length: 265
    Chains: D
    EC#: 2.7.7.6   
    Details: RPO3
    Organism: Sulfolobus shibatae
    Gene Names: rpo3 rpoD
    UniProtKB: Protein Feature View | Search PDB | B8YB56  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 5 Type: protein Length: 180
    Chains: E
    EC#: 2.7.7.6   
    Details: RPO7
    Organism: Sulfolobus shibatae
    Gene Name: rpo7
    UniProtKB: Protein Feature View | Search PDB | B8YB57  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 6 Type: protein Length: 113
    Chains: F
    EC#: 2.7.7.6   
    Details: RPOF
    Organism: Sulfolobus shibatae
    Gene Name: rpo4
    UniProtKB: Protein Feature View | Search PDB | B8YB58  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 7 Type: protein Length: 132
    Chains: G
    EC#: 2.7.7.6   
    Details: RPO8
    Organism: Sulfolobus shibatae
    Gene Name: rpo8
    UniProtKB: Protein Feature View | Search PDB | B8YB59  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 8 Type: protein Length: 84
    Chains: H
    EC#: 2.7.7.6   
    Details: RPO5
    Organism: Sulfolobus shibatae
    Gene Names: rpo5 rpoH
    UniProtKB: Protein Feature View | Search PDB | B8YB60  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 9 Type: protein Length: 95
    Chains: K
    EC#: 2.7.7.6   
    Details: RPO6
    Organism: Sulfolobus shibatae
    Gene Names: rpo6 rpoK
    UniProtKB: Protein Feature View | Search PDB | B8YB61  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 10 Type: protein Length: 92
    Chains: L
    EC#: 2.7.7.6   
    Details: RPO11
    Organism: Sulfolobus shibatae
    Gene Names: rpo11 rpoL
    UniProtKB: Protein Feature View | Search PDB | B8YB62  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 11 Type: protein Length: 66
    Chains: N
    EC#: 2.7.7.6   
    Details: RPO10
    Organism: Sulfolobus shibatae
    Gene Names: rpo10 rpoN
    UniProtKB: Protein Feature View | Search PDB | B8YB63  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 12 Type: protein Length: 48
    Chains: P
    EC#: 2.7.7.6   
    Details: RPO12
    Organism: Sulfolobus shibatae
    Gene Names: rpo12 rpoP
    UniProtKB: Protein Feature View | Search PDB | B8YB64  
    Molecule: DNA-DIRECTED RNA POLYMERASE
    Polymer: 13 Type: protein Length: 104
    Chains: Q
    EC#: 2.7.7.6   
    Details: RPO13
    Organism: Sulfolobus shibatae
    Gene Name: rpo13
    UniProtKB: Protein Feature View | Search PDB | B8YB65  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 2
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 3
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 4
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 5
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 6
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 7
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 8
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 9
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 10
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 11
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 12
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
    Polymer: 13
    Scientific Name: Sulfolobus shibatae   Taxonomy   Common Name: Archaea  
     
  •   Related PDB Entries Hide
    Identifier Details
    2Y0S  CRYSTAL STRUCTURE OF SULFOLOBUS SHIBATAE RNA POLYMERASE IN P21 SPACE GROUP 
    4B1O  ARCHAEAL RNAP-DNA BINARY COMPLEX AT 4.32ANG 
    4B1P  ARCHAEAL RNAP-DNA BINARY COMPLEX AT 4.32ANG 
     
  •   Ligand Chemical Component Hide
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Wojtas, M.N.,  Mogni, M.,  Millet, O.,  Bell, S.D.,  Abrescia, N.G.A.

    Deposition:   2012-06-19
    Release:   2012-08-08
    Last Modified (REVDAT):   2012-11-07
     
  •   Revision History    Hide
    Mouse over text for details
    2012-11-07
    Citation
    2012-09-05
    Atom nomenclature
    2012-08-15
    Binding sites and description
    2012-08-15
    Linkage
    2012-08-15
    Other
    2012-08-15
    Atom nomenclature
    2012-08-15
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.20
    R-Value: 0.245 (obs.)
    R-Free: 0.301
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 195.73 α = 90.00 
    b = 212.41 β = 90.00 
    c = 128.76 γ = 90.00