Human PDK1 Kinase Domain in Complex with Allosteric Compound PS210 Bound to the PIF-Pocket DOI:10.2210/pdb4aw1/pdb

4AW1   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 36643.94 Molecule: 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 Polymer: 1 Type: protein Length: 311 Chains: A EC#: 2.7.11.1    Fragment: CATALYTIC DOMAIN, RESIDUES 51-359 Mutation: YES Details: PHOSPHORYLATION AT S241 Organism Homo sapiens Gene Names PDPK1 PDK1 UniProtKB:   Protein Feature View | Search PDB | O15530         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda       Related PDB Entries Hide Identifier Details 1H1W  HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN  1OKY  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE  1OKZ  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01  1UU3  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531  1UU7  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2  1UU8  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1  1UU9  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3  1UVR  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8  1W1D  CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1,3,4,5)-TETRAKISPHOSPHATE  1W1G  CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO DIC4-PHOSPHATIDYLINOSITOL (3,4,5)- TRISPHOSPHATE  1W1H  CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN  1Z5M  CRYSTAL STRUCTURE OF N1-[3-[[5-BROMO-2-[[3-[(1- PYRROLIDINYLCARBONYL)AMINO]PHENYL]AMINO]-4-PYRIMIDINYL] AMINO]PROPYL]-2,2-DIMETHYLPROPANEDIAMIDECOMPLEXED WITH HUMAN PDK1  2BIY  STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN  2VKI  STRUCTURE OF THE PDK1 PH DOMAIN K465E MUTANT  2XCH  CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR  2XCK  CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR  4A06  HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH ALLOSTERIC ACTIVATOR PS114 BOUND TO THE PIF-POCKET  4A07  HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH ALLOSTERIC ACTIVATOR PS171 BOUND TO THE PIF-POCKET  4AW0  HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH ALLOSTERIC COMPOUND PS182 BOUND TO THE PIF-POCKET      Ligand Chemical Component Hide Identifier Formula Name Interactions 21O Search  Download  C19 H15 F3 O5 {(1R)-3-oxo-1-phenyl-3-[4-(trifluoromethyl)phenyl]propyl}propanedioic acid   Ligand Explorer ATP Search  Download  C10 H16 N5 O13 P3 ADENOSINE-5'-TRIPHOSPHATE   Ligand Explorer CL Search  Download  Cl CHLORIDE ION   Ligand Explorer DMS Search  Download  C2 H6 O S DIMETHYL SULFOXIDE   Ligand Explorer MN Search  Download  Mn MANGANESE (II) ION   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type SEP Search  C3 H8 N O6 P SER lPeptideLinking     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Schulze, J.O.,  Busschots, K.,  Lopez-Garcia, L.A.,  Lammi, C.,  Stroba, A.,  Zeuzem, S.,  Piiper, A.,  Alzari, P.M.,  Neimanis, S.,  Arencibia, J.M.,  Engel, M.,  Biondi, R.M. Deposition:   2012-05-30 Release:   2012-10-03 Last Modified (REVDAT):   2012-10-10     Revision History    Hide Mouse over text for details 2012-10-10 Sequence database correspondence 2012-10-10 Polymer description 2012-10-10 Secondary structure 2012-10-10 Other     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.68 R-Value: 0.165 (obs.) R-Free: 0.186 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 145.65 α = 90.00  b = 42.67 β = 98.52  c = 46.33 γ = 90.00