4AUM

Crystal structure, recombinant expression and mutagenesis studies of the bifunctional catalase-phenol oxidase from Scytalidium thermophilum

Structural Biology Knowledgebase: 4AUM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.146
  • R-Value Work: 0.118

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AUM

Classification: OXIDOREDUCTASE

Total Structure Weight: 320295.28

Macromolecule Entities
Molecule Chains Length Organism Details
CATALASE-PHENOL OXIDASE A, B, C, D 719 Scytalidium thermophilum EC#: 1.11.1.6 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HDD
Query on HDD

A, B, C, D CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE
HEME (Synonym)
C34 H32 Fe N4 O5
UMGOPAWIGKFTRK-QQDQPIDJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

A PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.146
  • R-Value Work: 0.118
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 201.42 α = 90.00
b = 121.45 β = 115.51
c = 125.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-18
  • Released Date: 2013-02-27
  • Deposition author(s): Yuzugullu, Y., Trinh, C.H., Smith, M.A., Pearson, A.R., Phillips, S.E.V., Sutay Kocabas, D., Bakir, U., Ogel, Z.B., McPherson, M.J.

Revision History

  • 2013-04-03
    Type: Citation | Details: JRNL