Benzofuropyrimidinone Inhibitors of Pim-1
4ALW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 38073.41
    Molecule: PIM-1 KINASE
    Polymer: 1 Type: protein Length: 328
    Chains: A
    EC#: 2.7.11.1   
    Fragment: PROTEIN KINASE DOMAIN, RESIDUES 406-717
    Organism: Homo sapiens
    Gene Name: Gene View for PIM1
    UniProtKB: Protein Feature View | Search PDB | P11309  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1XQZ   CRYSTAL STRUCTURE OF HPIM-1 KINASE AT 2.1 A RESOLUTION 
    1XR1   CRYSTAL STRUCTURE OF HPIM-1 KINASE IN COMPLEX WITH AMP-PNPAT 2.1 A RESOLUTION 
    1XWS   CRYSTAL STRUCTURE OF THE HUMAN PIM1 KINASE DOMAIN 
    1YHS   CRYSTAL STRUCTURE OF PIM-1 BOUND TO STAUROSPORINE 
    1YI3   CRYSTAL STRUCTURE OF PIM-1 BOUND TO LY294002 
    1YI4   STRUCTURE OF PIM-1 BOUND TO ADENOSINE 
    1YWV   CRYSTAL STRUCTURES OF PROTO-ONCOGENE KINASE PIM1: A TARGETOF ABERRANT SOMATIC HYPERMUTATIONS IN DIFFUSE LARGE CELLLYMPHOMA 
    1YXS   CRYSTAL STRUCTURE OF KINASE PIM1 WITH P123M MUTATION 
    1YXT   CRYSTAL STRUCTURE OF KINASE PIM1 IN COMPLEX WITH AMPPNP 
    1YXU   CRYSTAL STRUCTURE OF KINASE PIM1 IN COMPLEX WITH AMP 
    1YXV   CRYSTAL STRUCTURE OF KINASE PIM1 IN COMPLEX WITH 3,4 -DIHYDROXY-1-METHYLQUINOLIN-2(1H)-ONE 
    1YXX   CRYSTAL STRUCTURE OF KINASE PIM1 IN COMPLEX WITH (3E )-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE 
    2BIK   HUMAN PIM1 PHOSPHORYLATED ON SER261 
    2BIL   THE HUMAN PROTEIN KINASE PIM1 IN COMPLEX WITH ITS CONSENSUS PEPTIDE PIMTIDE 
    2BZH   CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH A RUTHENIUM ORGANOMETALLIC LIGAND RU1 
    2BZI   CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH A RUTHENIUM ORGANOMETALLIC LIGAND RU2 
    2BZJ   CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH A RUTHENIUM ORGANOMETALLIC LIGAND RU3 
    2BZK   CRYSTAL STRUCTURE OF THE HUMAN PIM1 IN COMPLEX WITH AMPPNP AND PIMTIDE 
    2C3I   CRYSTAL STRUCTURE OF HUMAN PIM1 IN COMPLEX WITH IMIDAZOPYRIDAZIN I 
    2J2I   CRYSTAL STRUCTURE OF THE HUMAB PIM1 IN COMPLEX WITH LY333531 
    2XIX   PROTEIN KINASE PIM-1 IN COMPLEX WITH FRAGMENT-1 FROM CRYSTALLOGRAPHIC FRAGMENT SCREEN 
    2XIY   PROTEIN KINASE PIM-1 IN COMPLEX WITH FRAGMENT-2 FROM CRYSTALLOGRAPHIC FRAGMENT SCREEN 
    2XIZ   PROTEIN KINASE PIM-1 IN COMPLEX WITH FRAGMENT-3 FROM CRYSTALLOGRAPHIC FRAGMENT SCREEN 
    2XJ0   PROTEIN KINASE PIM-1 IN COMPLEX WITH FRAGMENT-4 FROM CRYSTALLOGRAPHIC FRAGMENT SCREEN 
    2XJ1   PROTEIN KINASE PIM-1 IN COMPLEX WITH SMALL MOLECULE INIBITOR 
    2XJ2   PROTEIN KINASE PIM-1 IN COMPLEX WITH SMALL MOLECULE INHIBITOR 
    4A7C   CRYSTAL STRUCTURE OF PIM1 KINASE WITH ETP46546 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    HY7
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    HY7 C16 H17 Br N4 O2
    8-BROMANYL-2-[(4-METHYLPIPERAZIN-1-YL)METHYL]- 3H-[1]BENZOFURO[3,2-D]PYRIMIDIN-4-ONE
    HY7:4ALW
    IMD
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    IMD C3 H5 N2
    IMIDAZOLE
    IMD:4ALW
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    HY7
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    HY7
    IC50: 27 nM (99) - data from BindingDB  
    IC50: 27 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Stout, T.J.,  Adams, L.

    Deposition:   2012-03-05
    Release:   2013-01-16
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.92
    R-Value: 0.158 (obs.)
    R-Free: 0.207
    Space Group: P 65
    Unit Cell:
      Length [Å] Angles [°]
    a = 97.45 α = 90.00 
    b = 97.45 β = 90.00 
    c = 81.00 γ = 120.00