4AIZ

Crystallographic structure of 3mJL2 from the germinal line lambda 3

Structural Biology Knowledgebase: 4AIZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.166

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AIZ

Classification: IMMUNE SYSTEM

Total Structure Weight: 46715.65

Macromolecule Entities
Molecule Chains Length Organism Details
V2-17 PROTEIN A, C, D 108 Homo sapiens Mutation: T5M
Gene Name(s): V2-17
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
V2-17 PROTEIN B 108 Homo sapiens Mutation: T5M
Gene Name(s): V2-17

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
88Q
Query on 88Q

D 1,5:6,10-dianhydro-3,4,7,8-tetradeoxy-2,9- bis-C-(hydroxymethyl)-L-manno-decitol
C12 H22 O6
FJMBBGDZFKPKCM-BJDJZHNGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

B CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.166
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.40 α = 90.00
b = 40.95 β = 90.15
c = 106.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-15
  • Released Date: 2013-03-06
  • Deposition author(s): Villalba, M.I., Luna, O.D., Rudino-Pinera, E., Sanchez, R., Sanchez-Lopez, R., Rojas-Trejo, S., Olamendi-Portugal, T., Fernandez-Velasco, D.A., Becerril, B.

Revision History

  • 2015-02-11
    Type: Citation | Details: JRNL
  • 2015-01-14
    Type: Citation | Details: JRNL