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Crystal structure of the holo omega-transaminase from Chromobacterium violaceum
4AH3
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 206107.78
    Molecule: OMEGA-TRANSAMINASE
    Polymer: 1 Type: protein Length: 459
    Chains: A, B, C, D
    EC#: 2.6.1.62   
    Organism: Chromobacterium violaceum
    Gene Name: CV_2025
    UniProtKB: Protein Feature View | Search PDB | Q7NWG4  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Chromobacterium violaceum   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4A6R  CRYSTAL STRUCTURE OF THE OMEGA TRANSAMINASE FROM CHROMOBACTERIUM VIOLACEUM IN THE APO FORM, CRYSTALLISED FROM POLYACRYLIC ACID 
    4A6T  CRYSTAL STRUCTURE OF THE OMEGA TRANSAMINASE FROM CHROMOBACTERIUM VIOLACEUM IN COMPLEX WITH PLP 
    4A6U  CRYSTAL STRUCTURE OF THE OMEGA TRANSAMINASE FROM CHROMOBACTERIUM VIOLACEUM IN THE APO FORM, CRYSTALLISED FROM PEG 3350 
    4A72  CRYSTAL STRUCTURE OF THE OMEGA TRANSAMINASE FROM CHROMOBACTERIUM VIOLACEUM IN A MIXTURE OF APO AND PLP -BOUND STATES 
    4B98  THE STRUCTURE OF THE OMEGA AMINOTRANSFERASE FROM PSEUDOMONAS AERUGINOSA 
    4B9B  THE STRUCTURE OF THE OMEGA AMINOTRANSFERASE FROM PSEUDOMONAS AERUGINOSA 
    4BA4  CRYSTAL STRUCTURE OF THE APO OMEGA-TRANSAMINASE FROM CHROMOBACTERIUM VIOLACEUM 
    4BA5  CRYSTAL STRUCTURE OF OMEGA-TRANSAMINASE FROM CHROMOBACTERIUM VIOLACEUM 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    PLP
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    PLP C8 H10 N O6 P
    PYRIDOXAL-5'-PHOSPHATE
    PLP:4AH3
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Sayer, C.,  Isupov, M.N.,  Littlechild, J.A.

    Deposition:   2012-02-03
    Release:   2012-02-15
    Last Modified (REVDAT):   2013-04-03
     
  •   Revision History    Hide
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    2013-04-03
    Citation
    2013-03-27
    Citation
    2013-03-27
    Entry authorship
    2013-03-27
    Other
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.57
    R-Value: 0.225 (obs.)
    R-Free: 0.273
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 61.89 α = 75.14 
    b = 62.23 β = 81.73 
    c = 119.61 γ = 76.17