4ACI

Structure of the C. glutamicum AcnR Crystal Form II

Structural Biology Knowledgebase: 4ACI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.142

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4ACI

Classification: TRANSCRIPTION

Total Structure Weight: 43663.01

Macromolecule Entities
Molecule Chains Length Organism Details
HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR A, B 191 Corynebacterium glutamicum Fragment: RESIDUES 2-188
Gene Name(s): acnR Cgl1541 cg1738
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A, B CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CIT N/A in BindingDB
N/A in BindingMoad
Kd: 6000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.142
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 34.21 α = 90.00
b = 72.79 β = 90.00
c = 145.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-15
  • Released Date: 2012-12-26
  • Deposition author(s): Garcia-Nafria, J., Baumgart, M., Turkenburg, J.P., Wilkinson, A.J., Bott, M., Wilson, K.S.

Revision History

  • 2013-06-19
    Type: Citation | Details: JRNL
  • 2013-05-01
    Type: Other | Details: REMARK 900
  • 2013-05-01
    Type: Citation | Details: JRNL
  • 2013-05-01
    Type: Entry authorship | Details: AUTHOR