4A9V

Pseudomonas fluorescens PhoX

Structural Biology Knowledgebase: 4A9V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.117
  • R-Value Work: 0.137

Literature

Macromolecules
Sequence Display for 4A9V

Classification: HYDROLASE

Total Structure Weight: 65502.91

Macromolecule Entities
Molecule Chains Length Organism Details
PHOX A 592 Pseudomonas fluorescens EC#: 3.1.3.1 IUBMB
Fragment: RESIDUES 48-633
Gene Name(s): Pfl01_5179
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FEO
Query on FEO

A MU-OXO-DIIRON
Fe2 O
NPMYUMBHPJGBFA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LI
Query on LI

A LITHIUM ION
Li
HBBGRARXTFLTSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.117
  • R-Value Work: 0.137
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.82 α = 90.00
b = 75.98 β = 90.00
c = 114.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-28
  • Released Date: 2012-12-05
  • Deposition author(s): Yong, S.C., Roversi, P., Lillington, J.E.D., Zeldin, O.B., Garman, E.F., Lea, S.M., Berks, B.C.

Revision History

  • 2014-09-17
    Type: Citation | Details: JRNL
  • 2014-09-10
    Type: Citation | Details: JRNL