4A6T

Crystal structure of the omega transaminase from Chromobacterium violaceum in complex with PLP

Structural Biology Knowledgebase: 4A6T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.165

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A6T

Classification: TRANSFERASE

Total Structure Weight: 206107.94

Macromolecule Entities
Molecule Chains Length Organism Details
OMEGA TRANSAMINASE A, B, C, D 459 Chromobacterium violaceum EC#: 2.6.1.18 IUBMB 2.6.1.62 IUBMB
Gene Name(s): CV_2025
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B, C, D PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.165
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.49 α = 105.44
b = 62.32 β = 90.90
c = 119.52 γ = 104.52

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-08
  • Released Date: 2012-01-25
  • Deposition author(s): Logan, D.T., Hakansson, M., Yengo, K., Svedendahl Humble, M., Engelmark Cassimjee, K., Walse, B., Abedi, V., Federsel, H.-J., Berglund, P.

Revision History

  • 2012-08-01
    Type: Citation | Details: JRNL